Database Read/Write Splitting in Frameworks/ORMs

Although one of the primary ideas behind frameworks is to keep things as simple as possible, sometimes they create issues in the long run. What I am about to discuss is something of a luxury problem (as scaling usually is), but it is a problem nonetheless.

When initially starting a project, whether you are using Ruby on Rails (Ruby), Django (Python), CakePHP (PHP), Catalyst (Perl), or any of the other 100s of frameworks in any of the languages out there, the first and most important thing to do is to get it out the door. Once you have done that, it’s time to get users, fix bugs, and add features. After you have done all that and you have a great web app, its time to think scaling. (Yes I realize that I have trivialized this process immensely, but its for a point, I promise).
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MySQL Error 1033: Incorrect Information in File

If you’ve ever been plagued by an error 1033 issue in MySQL (replication will show it as well), then I might be able to help you out. The error reads something like, “Incorrect information in file: ‘./mydb/table.frm’. I classify this as another one of MySQLs cryptic error messages. Here is how I determined that this was my problem.

Googling around got me an answer, but I had to read a bunch of different responses to piece together the answer. Essentially this issue (in my case) was a result of the InnoDB engine not loading up when MySQL was restarted. Therefore when MySQL tried to read the frm file (table description) which was written for an InnoDB table with the MyISAM reader, it didn’t like it. Since MyISAM is the fallback engine, it went to that and the table became unusable.
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Posted in MySQL. Tags: , . 1 Comment »

First Experience With Cassandra

I recently posted about my initial experience with Tokyo Cabinet. Now it’s time to get to work on Cassandra.

Cassandra is the production database that’s in use on Facebook for handling their email system and Digg.

One thing that I would like to note is that when I tested TC, I used the Perl API for both TC and TT. I tried both the Perl API and the Ruby API. I couldn’t get the Ruby API (written by Evan Weaver of Twitter) it to work at all with the Cassandra server (although I am sure the server included with the gem works well). I initially struggled quite a bit with the UUID aspects of the Perl API until I finally gave up and changed the ColumnFamily CompareWith type from

<columnfamily CompareWith="TimeUUIDType" Name="Users" />

to

<columnfamily CompareWith="BytesType" Name="Users" />

Then everything was working well and I began to write my tests. The layout that I ended up using is going to be one that works in a schemaless fashion. I created 2 consistent columns per user: email and person_id. Here is where it gets interesting and different for those of us used to RDBMS’s and having less columns. For this particular project, every time a user is sent an email, there is a “row” (I call it a row for those unfamiliar with Cassandra terminology, it is actually a column) added in the format of: send_dates_<date> (note the structure below). The value of this column is the mailing campaign id sent to the user on this date. This means that if the user receives 365 emails per year at one a day, then there will be 365 rows (or Cassandra columns) that start with send_dates_ and end with YYYY-MM-DD. Note the data structure below in a JSON ish format.

Users = {
    'foo@example.com': {
        email: 'foo@example.com',
        person_id: '123456',
        send_dates_2009-09-30: '2245',
        send_dates_2009-10-01: '2247',
    },
    'bar@baz.com': {
        email: 'bar@baz.com',
        person_id: '789',
        send_dates_2009-09-30: '2245',
        send_dates_2009-10-01: '2246',
    },
}

To understand all the data structures in Cassandra better, I strongly recommend reading WTF Is A SuperColumn Cassandra Data Model and Up And Running With Cassandra. They are written by folks at Digg and Twitter respectively and are well worth the reads.

So for my first iteration, I simply loaded up the data in the format mentioned above. Every insert does an insert of an email and person_id just in case they aren’t there to begin with. The initial data set has approximately 3.6 million records. This caused all sorts of problems with the default configurations (ie kept crashing on me). The changes I made to the default configuration are as follows:

  • Change the maximum file descriptors from 1024 (system default) to 65535 (or unlimited)
  • Change the default minimum and maximum Java -Xms256M -Xmx2G (could not get the data to load past 2.5 million records without upping max memory values)
[elubow@db5 db]$ time ./cas_load.pl -D 2009-09-30 -c queue-mail.ini -b lists/
usa: 99,272
top: 3,661,491
Total: 3,760,763

real    72m50.826s
user    29m57.954s
sys     2m18.816s
[elubow@db5 cassandra]# du -sh data/Mailings/ # Prior to data compaction
13G     data/Mailings/
[elubow@db5 cassandra]# du -sh data/Mailings/ # Post data compaction
1.4G    data/Mailings/

It was interesting to note that the write latency of about 3.6 million records was 0.004 ms. Also the data compaction brought the size of the records on disk down from 13G to 1.4G. Those figures are being achieved with the reads and writes happening on the same machines.

The load of the second data set took a mere 30m when compared to loading that same data set into Tokyo Cabinet which took closer to 180m.

luxe: 936,911
amex: 599,981
mex: 39,700
Total: 1,576,592

real    30m53.109s
user    12m53.507s
sys     0m59.363s
[elubow@db5 cassandra]# du -sh data/Mailings/
2.4G    data/Mailings/

Now that there is a dataset worth working with, it’s time to start the read tests.

For the first test, I am doing a simple get of the email column. This is just to iterate over the column and find out the approximate speed of the read operations.

Run 1: 134m59.923s
Run 2; 125m55.673s
Run 3: 127m21.342s
Run 4: 119m2.414s

For the second test, I made use of a Cassandra feature called get_slice. Since I have columns that are in the format send_dates_YYYY-MM-DD, I used get_slice to grab all column names on a per-row (each email address) basis that were between send_dates_2009-09-29 and send_dates_2009-10-29. The maximum amount that could be matched were 2 (since I only loaded 2 days worth of data into the data base). I used data from a 3rd day so I can get 0, 1, or 2 as results.

This first run is using the Perl version of the script.

Email Count: 3557584
Match 0: 4,247
Match 1: 1,993,273
Match 2: 1,560,064

real    177m23.000s
user    45m21.859s
sys     9m17.516s

Run 2: 151m27.042s

Subsequent runs I began to run into API issues and rewrote the same script in Python to see if the more well tested Thrift Python API was faster than the Thrift Perl API (and wouldn’t give me timeout issues). The Perl timeout issues ended up being fixable, but I continued with the tests in Python.

[elubow@db5 db]$ time python cas_get_slice.py
{0: 4170, 1: 1935783, 2: 1560042}
Total: 3557584

real    213m57.854s
user    14m57.768s
sys     0m51.634s

Run 2: 132m27.930s
Run 3: 156m19.906s
Run 4: 127m34.715s

Ultimately with Cassandra, there was quite a bit of a learning curve. But in my opinion is well worth it. Cassandra is an extremely powerful database system that I plan on continuing to explore in greater detail with a few more in depth tests. If you have the chance, take a look at Cassandra.

Posted in Databases. Tags: . 3 Comments »

Tokyo Tyrant and Tokyo Cabinet

Tokyo Tyrant and Tokyo Cabinet are the components for a database used by Mixi (basically a Japanese Facebook). And for work, I got to play with these tools for some research. Installing all this stuff along with the Perl APIs is incredibly easy.

Ultimately I am working on a comparison of Cassandra and Tokyo Cabinet, but I will get to more on Cassandra later.

Ideally the tests I am going to be doing are fairly simple. I am going to be loading a few million rows into a TCT database (which is a table database in TC terms) and then loading key, value pairs into the database. The layout in a hash format is basically going to be as follows:

{
      "user@example.com" => {   "sendDates" => {"2009-09-30"},   },
      "123456789" => {  "2009-09-30" => {"2287"}   },
}

I ran these tests in the following formats for INSERTing the data into the a table database and as serialized data in a hash database. It is necessary to point out that the load on this machine is the normal load. Therefore it cannot be a true benchmark. Since the conditions are not optimal (but really, when are they ever), take the results with a grain of salt. Also, there is some data munging going on during every iteration to grab the email addresses and other data. All this is being done through the Perl API and Tokyo Tyrant. The machine that this is running on is a Dual Dual Core 2.5GHz Intel Xeon processor with 16G of memory.

For the first round, a few things should be noted:

  • The totals referenced below are email address counts add/modified in the db
  • I am only using 1 connection to the Tokyo Tyrant DB and it is currently setup to handle 8 threads
  • I didn’t do any memory adjustment on startup, so the default (which is marginal) is in use
  • I am only using the standard put operations, not putcat, putkeep, or putnr (which I will be using later)

The results of the table database are as follows. It is also worth noting the size of the table is around 410M on disk.

[elubow@db5 db]$ time ./tct_test.pl -b lists/ -D 2009-09-30 -c queue-mail.ini
usa: 99,272
top: 3,661,491
Total: 3,760,763

real    291m53.204s
user    4m53.557s
sys     2m35.604s
[root@db5 tmp]# ls -l
-rw-r--r-- 1 root root 410798800 Oct  6 23:15 mailings.tct

The structure for the hash database (seeing as its only key value) is as follows:

      "user@example.com" => "2009-09-30",
      "123456789" => "2009-09-30|2287",

The results of loading the same data into a hash database are as follows. It is also worth noting the size of the table is around 360M on disk. This is significantly smaller than the 410M of the table database containing the same style data.

[elubow@db5 db]$ time ./tch_test.pl -b lists/ -D 2009-09-30 -c queue-mail.ini
usa: 99,272
top: 3,661,491
Total: 3,760,763

real    345m29.444s
user    2m23.338s
sys     2m15.768s
[root@db5 tmp]# ls -l
-rw-r--r-- 1 root root 359468816 Oct  7 17:50 mailings.tch

For the second round, I loaded a second days worth of data in to the database. I used the same layouts as above with the following noteworthy items:

  • I did a get first prior to the put to decide whether to use put or putcat
  • The new data structure is now either “2009-09-30,2009-10-01″ or “2009-09-30|1995,2009-10-01|1996″

Results of the hash database test round 2:

[elubow@db5 db]$ time ./tch_test.pl -b lists/ -D 2009-10-01 -c queue-mail.ini
luxe: 936,911
amex: 599,981
mex: 39,700
Total: 1,576,592

real    177m55.280s
user    1m53.289s
sys     2m8.606s
[elubow@db5 db]$ ls -l
-rw-r--r-- 1 root root 461176784 Oct  7 23:44 mailings.tch

Results of the table database test round 2:

[elubow@db5 db]$ time ./tct_test.pl -b lists/ -D 2009-10-01 -c queue-mail.ini
luxe: 936,911
amex: 599,981
mex: 39,700
Total: 1,576,592

real    412m19.007s
user    4m39.064s
sys     2m22.343s
[elubow@db5 db]$ ls -l
-rw-r--r-- 1 root root 512258816 Oct  8 12:41 mailings.tct

When it comes down to the final implementation, I will likely be parallelizing the put in some form. I would like to think that a database designed for this sort of thing works best in a concurrent environment (especially considering the default startup value is 8 threads).

It is obvious that when it comes to load times, that the hash database is much faster. Now its time to run some queries and see how this stuff goes down.

So I ran some queries first against the table database. I grabbed a new list of 3.6 million email addresses and iterated over the list, grabbed the record from the table database and counted how many dates (via array value counts) were entered for that email address. I ran the script 4 times and results were as follows. I typically throw out the first run since caching kicks in for the other runs.

Run 1: 10m35.689s
Run 2: 5m41.896s
Run 3: 5m44.505s
Run 4: 5m44.329s

Doing the same thing for the hash database, I got the following result set:

Run 1: 7m54.292s
Run 2: 4m13.467s
Run 3: 3m59.302s
Run 4: 4m13.277s

I think the results speak for themselves. A hash database is obviously faster (which is something most of us assumed from the beginning). The rest of time comes form programmatic comparisons like date comparisons in specific slices of the array. Load times can be sped up using concurrency, but given the requirements of the project, the gets have to be done in this sequential fashion.

Now its on to testing Cassandra in a similar fashion for comparison.